IL_8UJ9_180

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GCA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_180 not in the Motif Atlas

Geometric match to IL_8CRE_023

Geometric discrepancy: 0.1409

The information below is about IL_8CRE_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8UJ9|1|S2|G|23
8UJ9|1|S2|C|24
8UJ9|1|S2|A|25
*
8UJ9|1|S2|U|649
8UJ9|1|S2|A|650
8UJ9|1|S2|U|651

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23