IL_8UJ9_190
3D structure
- PDB id
- 8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJ9_190 not in the Motif Atlas
- Homologous match to IL_8CRE_399
- Geometric discrepancy: 0.1777
- The information below is about IL_8CRE_399
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UJ9|1|S2|U|116
8UJ9|1|S2|C|117
8UJ9|1|S2|C|118
8UJ9|1|S2|U|119
8UJ9|1|S2|U|120
8UJ9|1|S2|U|121
*
8UJ9|1|S2|A|343
8UJ9|1|S2|U|344
8UJ9|1|S2|U|345
8UJ9|1|S2|C|346
8UJ9|1|S2|G|347
Current chains
- Chain S2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SI
- 40S ribosomal protein S8
Coloring options: