IL_8UJ9_195

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_195 not in the Motif Atlas

Geometric match to IL_8P9A_333

Geometric discrepancy: 0.3473

The information below is about IL_8P9A_333

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8UJ9|1|S2|C|188
8UJ9|1|S2|U|189
8UJ9|1|S2|G|190
8UJ9|1|S2|A|191
8UJ9|1|S2|C|192
*
8UJ9|1|S2|G|207
8UJ9|1|S2|G|208
8UJ9|1|S2|A|209
8UJ9|1|S2|U|210
8UJ9|1|S2|G|211

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SI

40S ribosomal protein S8