IL_8UJ9_214

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_214 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1464

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8UJ9|1|S2|C|663
8UJ9|1|S2|A|664
8UJ9|1|S2|G|665
*
8UJ9|1|S2|C|1162
8UJ9|1|S2|C|1163
8UJ9|1|S2|G|1164

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SX

40S ribosomal protein S23