IL_8UJ9_215

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8UJ9|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_215 not in the Motif Atlas

Homologous match to IL_8P9A_405

Geometric discrepancy: 0.1246

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8UJ9|1|S2|G|665
8UJ9|1|S2|U|666
8UJ9|1|S2|U|667
8UJ9|1|S2|A|668
8UJ9|1|S2|A|669
8UJ9|1|S2|A|670
8UJ9|1|S2|A|671
*
8UJ9|1|S2|U|1161
8UJ9|1|S2|C|1162

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26