IL_8UJ9_238

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8UJ9|1|S2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_238 not in the Motif Atlas

Geometric match to IL_8P9A_429

Geometric discrepancy: 0.2676

The information below is about IL_8P9A_429

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8UJ9|1|S2|G|1203
8UJ9|1|S2|A|1204
*
8UJ9|1|S2|U|1694
8UJ9|1|S2|A|1695
8UJ9|1|S2|C|1696

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26