IL_8UJ9_250

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

8UJ9|1|S2|G|1330, 8UJ9|1|S2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJ9_250 not in the Motif Atlas

Geometric match to IL_5J7L_315

Geometric discrepancy: 0.3385

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8UJ9|1|S2|U|1329
8UJ9|1|S2|G|1330
8UJ9|1|S2|C|1331
8UJ9|1|S2|A|1332
*
8UJ9|1|S2|U|1499
8UJ9|1|S2|G|1500

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SU

40S ribosomal protein S20