3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
GCUCAGCGUG*CCGUUGAACCC
Length
21 nucleotides
Bulged bases
8UJ9|1|S2|U|1585, 8UJ9|1|S2|G|1587
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJ9|1|S2|G|1541
8UJ9|1|S2|C|1542
8UJ9|1|S2|U|1543
8UJ9|1|S2|C|1544
8UJ9|1|S2|A|1545
8UJ9|1|S2|G|1546
8UJ9|1|S2|C|1547
8UJ9|1|S2|G|1548
8UJ9|1|S2|U|1549
8UJ9|1|S2|G|1550
*
8UJ9|1|S2|C|1582
8UJ9|1|S2|C|1583
8UJ9|1|S2|G|1584
8UJ9|1|S2|U|1585
8UJ9|1|S2|U|1586
8UJ9|1|S2|G|1587
8UJ9|1|S2|A|1588
8UJ9|1|S2|A|1589
8UJ9|1|S2|C|1590
8UJ9|1|S2|C|1591
8UJ9|1|S2|C|1592

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SD
Small ribosomal subunit protein uS3
Chain SF
40S ribosomal protein S5
Chain SQ
Small ribosomal subunit protein uS9
Chain ST
40S ribosomal protein S19
Chain SU
40S ribosomal protein S20
Chain SZ
Small ribosomal subunit protein eS25
Chain Sd
40S ribosomal protein S29

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