IL_8UJB_009

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GCUCCCC*GGGCCC

Length

13 nucleotides

Bulged bases

8UJB|1|L5|C|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|L5|G|169
8UJB|1|L5|C|170
8UJB|1|L5|U|171
8UJB|1|L5|C|172
8UJB|1|L5|C|173
8UJB|1|L5|C|174
8UJB|1|L5|C|175
*
8UJB|1|L5|G|261
8UJB|1|L5|G|262
8UJB|1|L5|G|263
8UJB|1|L5|C|264
8UJB|1|L5|C|265
8UJB|1|L5|C|266

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L35