IL_8UJB_100

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJB_100 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.2103

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8UJB|1|L5|C|2589
8UJB|1|L5|G|2590
8UJB|1|L5|A|2591
8UJB|1|L5|U|2592
8UJB|1|L5|C|2593
*
8UJB|1|L5|G|2752
8UJB|1|L5|G|2753
8UJB|1|L5|G|2754
8UJB|1|L5|A|2755
8UJB|1|L5|G|2756

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34