IL_8UJB_111

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8UJB|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJB_111 not in the Motif Atlas

Homologous match to IL_8CRE_084

Geometric discrepancy: 0.0796

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8UJB|1|L5|C|2867
8UJB|1|L5|G|2868
8UJB|1|L5|U|2869
8UJB|1|L5|A|2870
8UJB|1|L5|A|2871
8UJB|1|L5|C|2872
*
8UJB|1|L5|G|2877
8UJB|1|L5|G|2878
8UJB|1|L5|A|2879
8UJB|1|L5|U|2880
8UJB|1|L5|A|2881
8UJB|1|L5|A|2882
8UJB|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA