IL_8UJB_117

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8UJB|1|L5|A|3663, 8UJB|1|L5|U|3679, 8UJB|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJB_117 not in the Motif Atlas

Homologous match to IL_8CRE_088

Geometric discrepancy: 0.0768

The information below is about IL_8CRE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20047.1

Basepair signature

cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UJB|1|L5|C|3660
8UJB|1|L5|G|3661
8UJB|1|L5|A|3662
8UJB|1|L5|A|3663
8UJB|1|L5|G|3664
8UJB|1|L5|G|3665
*
8UJB|1|L5|U|3677
8UJB|1|L5|G|3678
8UJB|1|L5|U|3679
8UJB|1|L5|U|3680
8UJB|1|L5|G|3681
8UJB|1|L5|A|3682
8UJB|1|L5|C|3683
8UJB|1|L5|G|3684

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA