IL_8UJB_123

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8UJB|1|L5|A|3785, 8UJB|1|L5|C|3791, 8UJB|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJB_123 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0569

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8UJB|1|L5|C|3781
8UJB|1|L5|C|3782
8UJB|1|L5|A|3783
8UJB|1|L5|A|3784
8UJB|1|L5|A|3785
8UJB|1|L5|U|3786
8UJB|1|L5|G|3787
8UJB|1|L5|C|3788
8UJB|1|L5|C|3789
8UJB|1|L5|U|3790
8UJB|1|L5|C|3791
8UJB|1|L5|G|3792
*
8UJB|1|L5|C|3808
8UJB|1|L5|G|3809
8UJB|1|L5|C|3810
8UJB|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA