IL_8UJB_143

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8UJB|1|L5|G|4522, 8UJB|1|L5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJB_143 not in the Motif Atlas

Homologous match to IL_8P9A_335

Geometric discrepancy: 0.0603

The information below is about IL_8P9A_335

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8UJB|1|L5|C|4456
8UJB|1|L5|U|4457
8UJB|1|L5|C|4458
*
8UJB|1|L5|G|4520
8UJB|1|L5|U|4521
8UJB|1|L5|G|4522
8UJB|1|L5|A|4523
8UJB|1|L5|G|4524

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23