IL_8UJB_210

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

8UJB|1|S2|U|556

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJB_210 not in the Motif Atlas

Geometric match to IL_8PFQ_001

Geometric discrepancy: 0.2216

The information below is about IL_8PFQ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8UJB|1|S2|A|528
8UJB|1|S2|A|529
8UJB|1|S2|U|530
*
8UJB|1|S2|A|554
8UJB|1|S2|A|555
8UJB|1|S2|U|556
8UJB|1|S2|U|557

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain Se

Small ribosomal subunit protein eS30