IL_8UJB_239

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GACGGAA*UUUGUAC

Length

14 nucleotides

Bulged bases

8UJB|1|S2|G|1207, 8UJB|1|S2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|S2|G|1203
8UJB|1|S2|A|1204
8UJB|1|S2|C|1205
8UJB|1|S2|G|1206
8UJB|1|S2|G|1207
8UJB|1|S2|A|1208
8UJB|1|S2|A|1209
*
8UJB|1|S2|U|1690
8UJB|1|S2|U|1691
8UJB|1|S2|U|1692
8UJB|1|S2|G|1693
8UJB|1|S2|U|1694
8UJB|1|S2|A|1695
8UJB|1|S2|C|1696

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SO

Small ribosomal subunit protein uS11

Chain Sa

40S ribosomal protein S26