IL_8UJB_261

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

8UJB|1|S2|A|1556, 8UJB|1|S2|A|1580, 8UJB|1|S2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|S2|G|1550
8UJB|1|S2|U|1551
8UJB|1|S2|G|1552
8UJB|1|S2|C|1553
8UJB|1|S2|C|1554
8UJB|1|S2|U|1555
8UJB|1|S2|A|1556
8UJB|1|S2|C|1557
8UJB|1|S2|C|1558
*
8UJB|1|S2|G|1577
8UJB|1|S2|U|1578
8UJB|1|S2|A|1579
8UJB|1|S2|A|1580
8UJB|1|S2|C|1581
8UJB|1|S2|C|1582

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SK

40S ribosomal protein S10

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29