IL_8UJB_263

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|S2|G|1604
8UJB|1|S2|G|1605
8UJB|1|S2|G|1606
8UJB|1|S2|A|1607
8UJB|1|S2|U|1608
8UJB|1|S2|C|1609
8UJB|1|S2|G|1610
*
8UJB|1|S2|C|1629
8UJB|1|S2|A|1630
8UJB|1|S2|U|1631
8UJB|1|S2|G|1632
8UJB|1|S2|A|1633
8UJB|1|S2|A|1634
8UJB|1|S2|C|1635

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19