IL_8UJB_276

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCCCGCC*GCGGAGCG

Length

15 nucleotides

Bulged bases

8UJB|1|S2|C|1753, 8UJB|1|S2|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|S2|C|1750
8UJB|1|S2|C|1751
8UJB|1|S2|C|1752
8UJB|1|S2|C|1753
8UJB|1|S2|G|1754
8UJB|1|S2|C|1755
8UJB|1|S2|C|1756
*
8UJB|1|S2|G|1777
8UJB|1|S2|C|1778
8UJB|1|S2|G|1779
8UJB|1|S2|G|1780
8UJB|1|S2|A|1781
8UJB|1|S2|G|1782
8UJB|1|S2|C|1783
8UJB|1|S2|G|1784

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6