IL_8UJC_028

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

8UJC|1|L5|C|501, 8UJC|1|L5|C|502, 8UJC|1|L5|C|503, 8UJC|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJC_028 not in the Motif Atlas

Geometric match to IL_1FUF_003

Geometric discrepancy: 0.1834

The information below is about IL_1FUF_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8UJC|1|L5|G|500
8UJC|1|L5|C|501
8UJC|1|L5|C|502
8UJC|1|L5|C|503
8UJC|1|L5|G|504
8UJC|1|L5|G|505
*
8UJC|1|L5|U|653
8UJC|1|L5|C|654

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18