IL_8UJC_064

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8UJC|1|L5|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJC_064 not in the Motif Atlas

Homologous match to IL_8CRE_040

Geometric discrepancy: 0.094

The information below is about IL_8CRE_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8UJC|1|L5|A|1723
8UJC|1|L5|G|1724
8UJC|1|L5|U|1725
*
8UJC|1|L5|A|1838
8UJC|1|L5|U|1839

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29