IL_8UJC_109

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8UJC|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJC_109 not in the Motif Atlas

Homologous match to IL_8CRE_084

Geometric discrepancy: 0.0799

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8UJC|1|L5|C|2867
8UJC|1|L5|G|2868
8UJC|1|L5|U|2869
8UJC|1|L5|A|2870
8UJC|1|L5|A|2871
8UJC|1|L5|C|2872
*
8UJC|1|L5|G|2877
8UJC|1|L5|G|2878
8UJC|1|L5|A|2879
8UJC|1|L5|U|2880
8UJC|1|L5|A|2881
8UJC|1|L5|A|2882
8UJC|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L37a