IL_8UJC_114

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8UJC|1|L5|A|3828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJC_114 not in the Motif Atlas

Homologous match to IL_8P9A_310

Geometric discrepancy: 0.1365

The information below is about IL_8P9A_310

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8UJC|1|L5|C|3632
8UJC|1|L5|C|3633
*
8UJC|1|L5|G|3827
8UJC|1|L5|A|3828
8UJC|1|L5|G|3829

Current chains

Chain L5

28S rRNA

Nearby chains