IL_8UJC_121

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8UJC|1|L5|A|3785, 8UJC|1|L5|C|3791, 8UJC|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJC_121 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0774

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8UJC|1|L5|C|3781
8UJC|1|L5|C|3782
8UJC|1|L5|A|3783
8UJC|1|L5|A|3784
8UJC|1|L5|A|3785
8UJC|1|L5|U|3786
8UJC|1|L5|G|3787
8UJC|1|L5|C|3788
8UJC|1|L5|C|3789
8UJC|1|L5|U|3790
8UJC|1|L5|C|3791
8UJC|1|L5|G|3792
*
8UJC|1|L5|C|3808
8UJC|1|L5|G|3809
8UJC|1|L5|C|3810
8UJC|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains