IL_8UJD_002

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8UJD|1|L5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_002 not in the Motif Atlas

Homologous match to IL_8P9A_232

Geometric discrepancy: 0.1098

The information below is about IL_8P9A_232

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8UJD|1|L5|A|12
8UJD|1|L5|U|13
8UJD|1|L5|C|14
*
8UJD|1|L8|G|143
8UJD|1|L8|U|144

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA [Homo sapiens]

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a