IL_8UJD_009

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCUCCCC*GGGCCC

Length

13 nucleotides

Bulged bases

8UJD|1|L5|U|171, 8UJD|1|L5|C|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|G|169
8UJD|1|L5|C|170
8UJD|1|L5|U|171
8UJD|1|L5|C|172
8UJD|1|L5|C|173
8UJD|1|L5|C|174
8UJD|1|L5|C|175
*
8UJD|1|L5|G|261
8UJD|1|L5|G|262
8UJD|1|L5|G|263
8UJD|1|L5|C|264
8UJD|1|L5|C|265
8UJD|1|L5|C|266

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L35