IL_8UJD_011

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCUCGUGG*CGGC

Length

12 nucleotides

Bulged bases

8UJD|1|L5|C|183, 8UJD|1|L5|G|186, 8UJD|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|G|182
8UJD|1|L5|C|183
8UJD|1|L5|U|184
8UJD|1|L5|C|185
8UJD|1|L5|G|186
8UJD|1|L5|U|187
8UJD|1|L5|G|188
8UJD|1|L5|G|189
*
8UJD|1|L5|C|252
8UJD|1|L5|G|253
8UJD|1|L5|G|254
8UJD|1|L5|C|255

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37