IL_8UJD_023

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8UJD|1|L5|G|483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_023 not in the Motif Atlas

Geometric match to IL_5T83_004

Geometric discrepancy: 0.3164

The information below is about IL_5T83_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

8UJD|1|L5|G|482
8UJD|1|L5|G|483
8UJD|1|L5|U|484
8UJD|1|L5|C|485
*
8UJD|1|L5|G|671
8UJD|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein L28