3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GGG*UAAUC
Length
8 nucleotides
Bulged bases
8UJD|1|L5|G|1625, 8UJD|1|L5|A|1637, 8UJD|1|L5|A|1638, 8UJD|1|L5|U|1639
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJD_060 not in the Motif Atlas
Homologous match to IL_8CRE_036
Geometric discrepancy: 0.0989
The information below is about IL_8CRE_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

8UJD|1|L5|G|1624
8UJD|1|L5|G|1625
8UJD|1|L5|G|1626
*
8UJD|1|L5|U|1636
8UJD|1|L5|A|1637
8UJD|1|L5|A|1638
8UJD|1|L5|U|1639
8UJD|1|L5|C|1640

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LN
60S ribosomal protein L15
Chain LP
60S ribosomal protein L17
Chain Lj
60S ribosomal protein L37

Coloring options:


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