3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
CGGUAA*UAAAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJD|1|L5|C|1732
8UJD|1|L5|G|1733
8UJD|1|L5|G|1734
8UJD|1|L5|U|1735
8UJD|1|L5|A|1736
8UJD|1|L5|A|1737
*
8UJD|1|L5|U|1792
8UJD|1|L5|A|1793
8UJD|1|L5|A|1794
8UJD|1|L5|A|1795
8UJD|1|L5|U|1796
8UJD|1|L5|G|1797

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LD
Large ribosomal subunit protein uL18
Chain LF
60S ribosomal protein L7
Chain LI
Ribosomal protein uL16-like
Chain LS
60S ribosomal protein L18a
Chain LT
60S ribosomal protein L21

Coloring options:

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