IL_8UJD_085
3D structure
- PDB id
- 8UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 60S ribosome with eIF6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAGUCGAGAGUGGACGGGAGCGGC*GAGCCCCGCGGACGCUACG
- Length
- 43 nucleotides
- Bulged bases
- 8UJD|1|L5|G|2096, 8UJD|1|L5|U|2097, 8UJD|1|L5|A|2253, 8UJD|1|L5|G|2254, 8UJD|1|L5|C|2255, 8UJD|1|L5|C|2256, 8UJD|1|L5|C|2257, 8UJD|1|L5|C|2260, 8UJD|1|L5|C|2266, 8UJD|1|L5|U|2267, 8UJD|1|L5|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UJD|1|L5|C|2087
8UJD|1|L5|A|2088
8UJD|1|L5|G|2089
8UJD|1|L5|U|2090
8UJD|1|L5|C|2091
8UJD|1|L5|G|2092
8UJD|1|L5|A|2093
8UJD|1|L5|G|2094
8UJD|1|L5|A|2095
8UJD|1|L5|G|2096
8UJD|1|L5|U|2097
8UJD|1|L5|G|2098
8UJD|1|L5|G|2099
8UJD|1|L5|A|2100
8UJD|1|L5|C|2101
8UJD|1|L5|G|2102
8UJD|1|L5|G|2103
8UJD|1|L5|G|2104
8UJD|1|L5|A|2105
8UJD|1|L5|G|2106
8UJD|1|L5|C|2107
8UJD|1|L5|G|2108
8UJD|1|L5|G|2109
8UJD|1|L5|C|2110
*
8UJD|1|L5|G|2252
8UJD|1|L5|A|2253
8UJD|1|L5|G|2254
8UJD|1|L5|C|2255
8UJD|1|L5|C|2256
8UJD|1|L5|C|2257
8UJD|1|L5|C|2258
8UJD|1|L5|G|2259
8UJD|1|L5|C|2260
8UJD|1|L5|G|2261
8UJD|1|L5|G|2262
8UJD|1|L5|A|2263
8UJD|1|L5|C|2264
8UJD|1|L5|G|2265
8UJD|1|L5|C|2266
8UJD|1|L5|U|2267
8UJD|1|L5|A|2268
8UJD|1|L5|C|2269
8UJD|1|L5|G|2270
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lr
- 60S ribosomal protein L28
Coloring options: