IL_8UJD_090

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_090 not in the Motif Atlas

Homologous match to IL_8CRE_065

Geometric discrepancy: 0.0731

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8UJD|1|L5|G|2358
8UJD|1|L5|U|2359
8UJD|1|L5|A|2360
8UJD|1|L5|G|2361
8UJD|1|L5|U|2362
8UJD|1|L5|A|2363
8UJD|1|L5|G|2364
*
8UJD|1|L5|C|3858
8UJD|1|L5|G|3859
8UJD|1|L5|A|3860
8UJD|1|L5|A|3861
8UJD|1|L5|A|3862
8UJD|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17