3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
UGGAAUG*CGAGAGA
Length
14 nucleotides
Bulged bases
8UJD|1|L5|U|2661, 8UJD|1|L5|A|2674
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJD_102 not in the Motif Atlas
Homologous match to IL_8P9A_301
Geometric discrepancy: 0.1232
The information below is about IL_8P9A_301
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93476.1
Basepair signature
cWW-tSH-L-R-tSS-tHS-L-R-cWW
Number of instances in this motif group
6

Unit IDs

8UJD|1|L5|U|2656
8UJD|1|L5|G|2657
8UJD|1|L5|G|2658
8UJD|1|L5|A|2659
8UJD|1|L5|A|2660
8UJD|1|L5|U|2661
8UJD|1|L5|G|2662
*
8UJD|1|L5|C|2672
8UJD|1|L5|G|2673
8UJD|1|L5|A|2674
8UJD|1|L5|G|2675
8UJD|1|L5|A|2676
8UJD|1|L5|G|2677
8UJD|1|L5|A|2678

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19
Chain LZ
60S ribosomal protein L27
Chain Lc
60S ribosomal protein L30
Chain Lg
60S ribosomal protein L34
Chain Lp
60S ribosomal protein L37a

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