IL_8UJD_106
3D structure
- PDB id
- 8UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 60S ribosome with eIF6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 8UJD|1|L5|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJD_106 not in the Motif Atlas
- Geometric match to IL_8P9A_305
- Geometric discrepancy: 0.0753
- The information below is about IL_8P9A_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8UJD|1|L5|G|2847
8UJD|1|L5|G|2848
8UJD|1|L5|A|2849
8UJD|1|L5|A|2850
8UJD|1|L5|G|2851
8UJD|1|L5|U|2852
8UJD|1|L5|C|2853
8UJD|1|L5|G|2854
8UJD|1|L5|G|2855
*
8UJD|1|L5|C|3837
8UJD|1|L5|U|3838
8UJD|1|L5|G|3839
8UJD|1|L5|U|3840
8UJD|1|L5|C|3841
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LV
- 60S ribosomal protein L23
Coloring options: