IL_8UJD_108

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8UJD|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_108 not in the Motif Atlas

Homologous match to IL_8CRE_084

Geometric discrepancy: 0.0861

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8UJD|1|L5|C|2867
8UJD|1|L5|G|2868
8UJD|1|L5|U|2869
8UJD|1|L5|A|2870
8UJD|1|L5|A|2871
8UJD|1|L5|C|2872
*
8UJD|1|L5|G|2877
8UJD|1|L5|G|2878
8UJD|1|L5|A|2879
8UJD|1|L5|U|2880
8UJD|1|L5|A|2881
8UJD|1|L5|A|2882
8UJD|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L37a