IL_8UJD_114

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8UJD|1|L5|A|3663, 8UJD|1|L5|U|3679, 8UJD|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_114 not in the Motif Atlas

Homologous match to IL_8CRE_088

Geometric discrepancy: 0.0842

The information below is about IL_8CRE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20047.1

Basepair signature

cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UJD|1|L5|C|3660
8UJD|1|L5|G|3661
8UJD|1|L5|A|3662
8UJD|1|L5|A|3663
8UJD|1|L5|G|3664
8UJD|1|L5|G|3665
*
8UJD|1|L5|U|3677
8UJD|1|L5|G|3678
8UJD|1|L5|U|3679
8UJD|1|L5|U|3680
8UJD|1|L5|G|3681
8UJD|1|L5|A|3682
8UJD|1|L5|C|3683
8UJD|1|L5|G|3684

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a