IL_8UJD_120

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8UJD|1|L5|A|3785, 8UJD|1|L5|C|3791, 8UJD|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_120 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0774

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8UJD|1|L5|C|3781
8UJD|1|L5|C|3782
8UJD|1|L5|A|3783
8UJD|1|L5|A|3784
8UJD|1|L5|A|3785
8UJD|1|L5|U|3786
8UJD|1|L5|G|3787
8UJD|1|L5|C|3788
8UJD|1|L5|C|3789
8UJD|1|L5|U|3790
8UJD|1|L5|C|3791
8UJD|1|L5|G|3792
*
8UJD|1|L5|C|3808
8UJD|1|L5|G|3809
8UJD|1|L5|C|3810
8UJD|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains