IL_8UJD_128

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8UJD|1|L5|A|4203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_128 not in the Motif Atlas

Homologous match to IL_8P9A_325

Geometric discrepancy: 0.0871

The information below is about IL_8P9A_325

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8UJD|1|L5|G|4191
8UJD|1|L5|A|4192
*
8UJD|1|L5|U|4202
8UJD|1|L5|A|4203
8UJD|1|L5|C|4204

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29

Chain Lo

60S ribosomal protein L36a