IL_8UJD_137

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_137 not in the Motif Atlas

Homologous match to IL_8CRE_114

Geometric discrepancy: 0.1365

The information below is about IL_8CRE_114

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8UJD|1|L5|C|4412
8UJD|1|L5|C|4413
8UJD|1|L5|A|4414
8UJD|1|L5|A|4415
8UJD|1|L5|G|4416
*
8UJD|1|L5|C|4426
8UJD|1|L5|G|4427
8UJD|1|L5|A|4428
8UJD|1|L5|C|4429
8UJD|1|L5|G|4430

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lm

Large ribosomal subunit protein eL40