3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
CCUCGGAUAG*UGCGGAGUG
Length
19 nucleotides
Bulged bases
8UJD|1|L5|C|4757, 8UJD|1|L5|U|4758, 8UJD|1|L5|A|4764, 8UJD|1|L5|G|4870, 8UJD|1|L5|C|4871, 8UJD|1|L5|G|4873, 8UJD|1|L5|U|4876
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJD|1|L5|C|4756
8UJD|1|L5|C|4757
8UJD|1|L5|U|4758
8UJD|1|L5|C|4759
8UJD|1|L5|G|4760
8UJD|1|L5|G|4761
8UJD|1|L5|A|4762
8UJD|1|L5|U|4763
8UJD|1|L5|A|4764
8UJD|1|L5|G|4765
*
8UJD|1|L5|U|4869
8UJD|1|L5|G|4870
8UJD|1|L5|C|4871
8UJD|1|L5|G|4872
8UJD|1|L5|G|4873
8UJD|1|L5|A|4874
8UJD|1|L5|G|4875
8UJD|1|L5|U|4876
8UJD|1|L5|G|4877

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LE
60S ribosomal protein L6
Chain LH
60S ribosomal protein L9
Chain LM
60S ribosomal protein L14
Chain LO
60S ribosomal protein L13a
Chain LS
60S ribosomal protein L18a

Coloring options:

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