IL_8UJD_160

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGAAACGG*CUCGCC

Length

14 nucleotides

Bulged bases

8UJD|1|L5|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|G|4890
8UJD|1|L5|G|4891
8UJD|1|L5|A|4892
8UJD|1|L5|A|4893
8UJD|1|L5|A|4894
8UJD|1|L5|C|4895
8UJD|1|L5|G|4896
8UJD|1|L5|G|4897
*
8UJD|1|L5|C|4924
8UJD|1|L5|U|4925
8UJD|1|L5|C|4926
8UJD|1|L5|G|4927
8UJD|1|L5|C|4928
8UJD|1|L5|C|4929

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a