IL_8UJD_165

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

8UJD|1|L5|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJD_165 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.3845

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8UJD|1|L5|C|4996
8UJD|1|L5|G|4997
*
8UJD|1|L5|U|5053
8UJD|1|L5|C|5054
8UJD|1|L5|G|5055

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Ld

60S ribosomal protein L31