IL_8UJD_169
3D structure
- PDB id
- 8UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 60S ribosome with eIF6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJD_169 not in the Motif Atlas
- Homologous match to IL_8CRE_141
- Geometric discrepancy: 0.2015
- The information below is about IL_8CRE_141
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8UJD|1|L5|A|5014
8UJD|1|L5|G|5015
8UJD|1|L5|A|5016
8UJD|1|L5|G|5017
*
8UJD|1|L5|C|5032
8UJD|1|L5|G|5033
8UJD|1|L5|A|5034
8UJD|1|L5|U|5035
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain LW
- Ribosomal protein L24
Coloring options: