IL_8UJJ_022

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8UJJ|1|L5|C|685, 8UJJ|1|L5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJJ|1|L5|A|466
8UJJ|1|L5|U|467
8UJJ|1|L5|U|468
8UJJ|1|L5|C|469
8UJJ|1|L5|A|470
8UJJ|1|L5|A|471
8UJJ|1|L5|C|472
*
8UJJ|1|L5|G|682
8UJJ|1|L5|C|683
8UJJ|1|L5|G|684
8UJJ|1|L5|C|685
8UJJ|1|L5|A|686
8UJJ|1|L5|U|687
8UJJ|1|L5|U|688
8UJJ|1|L5|U|689

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28