IL_8UJJ_027

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GCCCGG*UCC

Length

9 nucleotides

Bulged bases

8UJJ|1|L5|C|501, 8UJJ|1|L5|C|502, 8UJJ|1|L5|C|503, 8UJJ|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJJ|1|L5|G|500
8UJJ|1|L5|C|501
8UJJ|1|L5|C|502
8UJJ|1|L5|C|503
8UJJ|1|L5|G|504
8UJJ|1|L5|G|505
*
8UJJ|1|L5|U|653
8UJJ|1|L5|C|654
8UJJ|1|L5|C|655

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18