IL_8UJJ_035

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GAAGGUGGCU*AGUGUUACAGC

Length

21 nucleotides

Bulged bases

8UJJ|1|L5|G|748, 8UJJ|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJJ|1|L5|G|745
8UJJ|1|L5|A|746
8UJJ|1|L5|A|747
8UJJ|1|L5|G|748
8UJJ|1|L5|G|749
8UJJ|1|L5|U|750
8UJJ|1|L5|G|751
8UJJ|1|L5|G|752
8UJJ|1|L5|C|753
8UJJ|1|L5|U|754
*
8UJJ|1|L5|A|909
8UJJ|1|L5|G|910
8UJJ|1|L5|U|911
8UJJ|1|L5|G|912
8UJJ|1|L5|U|913
8UJJ|1|L5|U|914
8UJJ|1|L5|A|915
8UJJ|1|L5|C|916
8UJJ|1|L5|A|917
8UJJ|1|L5|G|918
8UJJ|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a