IL_8UJJ_056

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8UJJ|1|L5|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJJ_056 not in the Motif Atlas

Homologous match to IL_8P9A_260

Geometric discrepancy: 0.0859

The information below is about IL_8P9A_260

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8UJJ|1|L5|C|1590
8UJJ|1|L5|U|1591
8UJJ|1|L5|G|1592
*
8UJJ|1|L5|C|1603
8UJJ|1|L5|G|1604

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Lj

60S ribosomal protein L37