IL_8UJJ_110

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8UJJ|1|L5|A|3663, 8UJJ|1|L5|U|3679, 8UJJ|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJJ_110 not in the Motif Atlas

Homologous match to IL_8P9A_311

Geometric discrepancy: 0.1234

The information below is about IL_8P9A_311

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

4

Unit IDs

8UJJ|1|L5|C|3660
8UJJ|1|L5|G|3661
8UJJ|1|L5|A|3662
8UJJ|1|L5|A|3663
8UJJ|1|L5|G|3664
8UJJ|1|L5|G|3665
*
8UJJ|1|L5|U|3677
8UJJ|1|L5|G|3678
8UJJ|1|L5|U|3679
8UJJ|1|L5|U|3680
8UJJ|1|L5|G|3681
8UJJ|1|L5|A|3682
8UJJ|1|L5|C|3683
8UJJ|1|L5|G|3684

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA