IL_8UJJ_117

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8UJJ|1|L5|A|3785, 8UJJ|1|L5|C|3791, 8UJJ|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJJ_117 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.1109

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8UJJ|1|L5|C|3781
8UJJ|1|L5|C|3782
8UJJ|1|L5|A|3783
8UJJ|1|L5|A|3784
8UJJ|1|L5|A|3785
8UJJ|1|L5|U|3786
8UJJ|1|L5|G|3787
8UJJ|1|L5|C|3788
8UJJ|1|L5|C|3789
8UJJ|1|L5|U|3790
8UJJ|1|L5|C|3791
8UJJ|1|L5|G|3792
*
8UJJ|1|L5|C|3808
8UJJ|1|L5|G|3809
8UJJ|1|L5|C|3810
8UJJ|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA