IL_8UJJ_133

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8UJJ|1|L5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJJ_133 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.1718

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8UJJ|1|L5|G|4405
8UJJ|1|L5|U|4406
8UJJ|1|L5|G|4407
*
8UJJ|1|L5|U|4435
8UJJ|1|L5|U|4436
8UJJ|1|L5|U|4437
8UJJ|1|L5|U|4438
8UJJ|1|L5|U|4439

Current chains

Chain L5

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain LB

Large ribosomal subunit protein uL3

Chain LI

Ribosomal protein uL16-like